All modules for which code is available

• bripipetools.annotation.flowcellruns
• bripipetools.annotation.processedlibs
• bripipetools.annotation.sequencedlibs
• bripipetools.annotation.workflowbatches
• bripipetools.database.connection
• bripipetools.database.mapping
• bripipetools.database.operations
• bripipetools.dbification.control
• bripipetools.dbification.flowcellrun
• bripipetools.dbification.workflowbatch
• bripipetools.io.fastqc
• bripipetools.io.htseqcounts
• bripipetools.io.htseqmetrics
• bripipetools.io.picardmetrics
• bripipetools.io.sexcheck
• bripipetools.io.tophatstats
• bripipetools.io.workflow
• bripipetools.io.workflowbatch
• bripipetools.model.documents
• bripipetools.monitoring.workflowbatches
• bripipetools.parsing.gencore
• bripipetools.parsing.illumina
• bripipetools.parsing.processing
• bripipetools.postprocessing.cleanup
• bripipetools.postprocessing.compiling
• bripipetools.postprocessing.stitching
• bripipetools.qc.sexcheck
• bripipetools.qc.sexpredict
• bripipetools.qc.sexverify
• bripipetools.submission.batchcreate
• bripipetools.submission.batchparameterize
• bripipetools.submission.flowcellsubmit
• bripipetools.submission.samplesubmit
• bripipetools.util.files
• bripipetools.util.strings